Genomic Science Program

External Resources

No endorsement is made or implied by inclusion here.

Tools

• Agile Molecule: Software for molecular modeling
• BioCatalog: software directory of general interest in molecular biology and genetics
• Bioinformatics, Databases and Software for Medicine
• Bioinformatics.org: The Open Lab: provides information on free tools being developed for bioinformatics research.
• Bioinformatik: software, tutorials, databases, literature, technologies, jobs, and resources.
• Biomedical Acronym Resolver: Identifies acronyms/abbreviations and their definitions within MEDLINE records.
• BioNetbook: directory of Web pages for Biology
• BioToolKit: an annotated directory of key molecular biology research tools.
• Bio-Web: Resources for Molecular and Cell Biologists: life sciences news, sequence analysis tools, journals and publishers, research institutions, software, and bio-links
• BLAST: NCBI's sequence similarity search tool supports analysis of nucleotide and protein databases.
• BRITE: database of binary relations for computation and graph comparisons
• Computational Biochemistry Research Group
• Computational Biosciences: protein and DNA sequence analysis and annotation
• Computational Molecular Biology
• DbBrowser at University of Manchester Bioinformatics Education and Research: accesses protein sequence and structure databases
• dbEST: Expressed Sequence Tags from a number of organisms.
• GenePath: web-enabled intelligent assistant for genetic data analysis and discovery of genetic networks
• Genetic Linkage Analysis
• Genetics from Google
• Genome Channel: Genome annotation and analysis
• Genome Sciences Department: Lawrence Berkeley National Laboratory
• GLIMMER: a system for finding genes in microbial DNA
• GRAIL: Gene Recognition and Assembly Internet Link: sequencing analysis
• HyperCLDB: cell culture availability in Italian and European laboratories
• IMAGE Consortium: Integrated Molecular Analysis of Genomes and their Expression
• Internet for the Molecular Biologist
• Iubio Archive: biology data and software
• KEGG: Kyoto Encyclopedia of Genes and Genomes
• Linux Online - Category: Scientific / biology
• Making PCR: an interactive site devoted to conversation and debate about the past, present, and future of PCR technology.
• Malaysian Genomics Resource Centre
• Microbiology Jump Station: collection of links for microbiologists
• MIDI Labs: Microbial Identification
• Molecular Biological Server: computer systems, databases and programs for molecular biology
• Molecular Biology Gateway
• Molecular Biology Jump Station: collection of links for biologists
• Molecular Genetics Jump Station: collection of links for genetics
• NCBI Education: tutorials for NCBI's bioinformatics tools
• Nucleic Acid Database (NDB) Project: goal is to assemble and distribute structural information about nucleic acids
• PBIL: allows browsing through numerous databases and access to many tools for nucleotide or protein sequence analysis
• PCR Jump Station: (Polymerase Chain Reaction)
• PDBSum: Summaries and Structural analysis of PDB data files
• PEDANT: Protein Extraction, Description, and ANalysis Tool
• Pfam - Protein families database of alignments and HMMs: protein families database of alignments and HMMs
• PRINTS A compendium of protein fingerprints
• ProtoNet: offers automatic hierarchical classification of proteins
• Reactome; a knowledge base of biological processes
• SAMBA: Systolic Accelerator for Molecular Biological Applications
• SDSC Biology Workbench
• SearchLauncher: provides a single point of entry for related WWW search and analysis services
• Secondary structure assignment database (DSSP) program: for DSSP database
• Seq-Gen: Sequence-Generator: application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees
• SignalP: predicts signal peptides cleavage sites in amino acid sequences
• SWISS-MODEL: Automated Comparative Protein Modelling Server
• TESS: Transcription Element Search System
• VISTA: programs and databases for comparative analysis of genomic sequences from Lawrence Berkeley National Laboratory
• Visual Molecular Dynamics: molecular visualization program for displaying and animating large biomolecular systems using 3-D graphics
• Web Guide of Polymerase Chain Reaction Technique: Selected and Organized Links About PCR® Technique
• WWW Virtual Library: Biosciences: searchable index

Links Updated 07-Nov-09

Microarray category has been moved.

Resources

• 123Genomics: Genomics, Proteomics and Bioinformatics Knowledge Base
• 2can Bioinformatics Educational Resource
• Addgene Plasmid Repository for Life Sciences: non-profit organization promoting sharing of plasmid constructs
• All DNA Info DNA Directory: Directory of DNA information, source, companies, products and services
• American Type Culture Collection (ATCC): a global bioscience organization that provides biological products, technical services, and educational programs to private industry, government, and academic organizations around the world
• Bibliography on Computational Gene Recognition
• Bioinformatic resources, University of Otago, Dunedin, New Zealand: includes Transterm (tools for translational control elements) and Mlogd (detects overlapping genes)
• Bioinformatics Perl Script Library
• Bioinformatics, Databases and Software for Medicine
• BioMolecular Engineering Research Center and Molecular Biology Computer Research Resource
• BIOSCI/Bionet Newsgroup Archives: science and technology newsgroups in the biological sciences.
• BIOSCI/Bionet Newsgroups: BIOSCI is a set of electronic communication forums - the bionet USENET newsgroups and parallel e-mail lists - used by biological scientists worldwide.
• BioToolKit: an annotated directory of key molecular biology research tools.
• Bio-Web: Resources for Molecular and Cell Biologists: life sciences news, sequence analysis tools, journals and publishers, research institutions, software, and bio-links
• Biozon: a unified biological resource on DNA sequences, proteins, complexes and cellular pathways.
• Books with Genomics Protocols
• Broad Institute: fulfulling the promise of genetics for medicine
• Carolina Biologicals
• Cell Signaling Technology: interactive pathway images
• Center for Biology on the Web: link directory
• Common Access to Biological Resources and Information (CABRI)
• Commonwealth Biotechnologies, Inc.: customized project design and management
• Computational Biochemistry Research Group
• Computational Biosciences: protein and DNA sequence analysis and annotation
• Computational Genetics Laboratory, Dartmouth College: open-source software for genetics
• Computing Services list from Rockefeller University
• CyberFiber Newsgroups: check the Health, Support, and Recovery and the Science and Technology areas.
• Dalton Chemical Laboratories, Inc.
• EBI Macromolecular Structure Database: European project for the collection, management and distribution of data about macromolecular structures, derived in part from the Protein Data Bank (PDB).
• EMBL Nucleotide Sequence Database: Europe's primary DNA and RNA sequence resource.
• Entrez Nucleotides (GenBank): Nucleotide sequences from several sources.
• EPAs Science Inventory: Agency-wide catalog of science activities
• European Bioinformatics Institute (EBI): European Molecular Biology Laboratory (EMBL) research center that manages databases of biological data including nucleic acid, protein sequences, and macromolecular structures.
• Functional Genomics Jump Station
• Fungal Genetics Stock Center
• GenBank -- National Center for Biotechnology Information
• Generation: Microbial Gene Prediction System
• Genetics from Google
• Genome Analysis Pipeline: submit sequences via web interface for comprehensive analysis
• Genomic Science Program from the U.S. Department of Energy: The next step at the Department of Energy to accelerate understanding of dynamic living systems
• Genomics Research and Bioinformatics
• GrailEXP: Grail Experimental Gene Discovery Suite: software package that predicts exons, genes, promoters, polyas, CpG islands, EST similarities, and repetitive elements within DNA sequence
• HyperCLDB: cell culture availability in Italian and European laboratories
• Library of Congress
• Linux Online - Category: Scientific / biology
• Macromolecule structures: requires Chime plugin to browser
• MicrobiologyProcedure.com: microbiology related reference resources
• MIT Knowledge Updates: educational briefings on life science topics
• Molecular Biology Directory
• National Genetics Reference Laboratories: Supporting the UK Genetic service Network
• Nature Technology Corporation: providing vector development and manufacturing assistance
• O'Reilly Science Center: books
• PCR Jump Station: (Polymerase Chain Reaction)
• PROSPECT (PROtein Structure Prediction and Evaluation Computer Toolkit)
• Real Time PCR Primer Sets: Database of validated primer sets for quantitative real time PCR
• RIKEN Bioresource Center DNA Bank: cultured animal and plant cell lines, DNA from Tsukuba, Japan
• Virtual Library Genetics: a subject catalog covering genetics in the biosciences; includes animals, plants, microbes, human genetics and genomic research
• Web Guide of Polymerase Chain Reaction Technique: Selected and Organized Links About PCR® Technique

Links Updated 07-Nov-09