U.S. Department of Energy Office of Science
Genomic Science Program
Systems Biology for Energy and Environment
External Resources
No endorsement is made or implied by inclusion here.
Mapping
- 2000 DOE Microbial Genome Report
- Computational Molecular Biology
- Department of Genome Analysis, GBF
- Generation: Microbial Gene Prediction System
- Généthon
- Genetic Linkage Analysis
- Genome Channel: Genome annotation and analysis
- Genomic Science Program from the U.S. Department of Energy: The next step at the Department of Energy to accelerate understanding of dynamic living systems
- IMAGE Consortium: Integrated Molecular Analysis of Genomes and their Expression
- NIH Funded Grants and Grant History
- Premier Biosoft International: Primer design and vector mapping software
- U.S. Department of Energy Microbial Genome Program
- U.S. Dept. of Energy Microbial Cell Project (Archive)
- Virtual Library Genetics: a subject catalog covering genetics in the biosciences; includes animals, plants, microbes, human genetics and genomic research
Links Updated 21-Nov-09
Sequencing
- 2000 DOE Microbial Genome Report
- BLAST: NCBI's sequence similarity search tool supports analysis of nucleotide and protein databases.
- Broad Institute: fulfulling the promise of genetics for medicine
- CELERA
- Completely Sequenced Genomes: Rockefeller University
- Computational Biosciences: protein and DNA sequence analysis and annotation
- DbBrowser at University of Manchester Bioinformatics Education and Research: accesses protein sequence and structure databases
- dbEST: Expressed Sequence Tags from a number of organisms.
- DDBJ - DNA Data Bank of Japan (National Institute of Genetics)
- EMBL Nucleotide Sequence Database: Europe's primary DNA and RNA sequence resource.
- ExPASy Molecular Biology Server (SWISS-PROT, etc.): EBI server dedicated to the analysis of protein sequences and structure as well as 2-D PAGE
- Gene Codes Corporation: Makers of the Sequencher sequence analysis program
- Genome Analysis Pipeline: submit sequences via web interface for comprehensive analysis
- Genome Channel: Genome annotation and analysis
- Genomic Science Program from the U.S. Department of Energy: The next step at the Department of Energy to accelerate understanding of dynamic living systems
- Genomics and Bioinformatics Center, Chinese Academy of Sciences
- Genoscope
- GOLD[TM] Genomes OnLine Database: monitors genome sequencing projects
- GRAIL: Gene Recognition and Assembly Internet Link: sequencing analysis
- IMAGE Consortium: Integrated Molecular Analysis of Genomes and their Expression
- JGI Microbial Genomics
- Joint Genome Institute: Department of Energy sequencing institution
- Kazusa DNA Research Institute
- NIH Funded Grants and Grant History
- NIH Genome Sequencing Proposals (2005)
- Nucleic Acid Database (NDB) and Structure Finder
- PBIL: allows browsing through numerous databases and access to many tools for nucleotide or protein sequence analysis
- Research Abstracts from the DOE Genome Program Contractor-Grantee Workshop IX (2002)
- Ribosomal Database Project
- RIKEN Bioresource Center DNA Bank: cultured animal and plant cell lines, DNA from Tsukuba, Japan
- Sanger Centre Sequencing
- SearchLauncher: provides a single point of entry for related WWW search and analysis services
- Seq-Gen: Sequence-Generator: application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees
- SignalP: predicts signal peptides cleavage sites in amino acid sequences
- Trace Archive from NCBI: a repository of the raw sequence traces generated by large sequencing projects
- U.S. Department of Energy Microbial Genome Program
- U.S. Dept. of Energy Microbial Cell Project (Archive)
- U.S. DOE Joint Genome Institute Twitter site
- University of Michigan Sequencing Core
- University of Oklahoma Advanced Center for Genome Technology
- University of Washington Genome Center
- Virtual Library Genetics: a subject catalog covering genetics in the biosciences; includes animals, plants, microbes, human genetics and genomic research
- Washington University: Genome Sequencing Center
Links Updated 21-Nov-09
Genes
- Computational Molecular Biology
- Environmental Genome Project
- Gene Ontology Consortium
- Genes and Genomes Issue The Scientist: VOLUME 13, No:15 July 19, 1999
- Généthon
- GLIMMER: a system for finding genes in microbial DNA
- RIKEN Bioresource Center DNA Bank: cultured animal and plant cell lines, DNA from Tsukuba, Japan
- UniGene: automatically partitions GenBank sequences into non-redundant set of gene-oriented clusters
- Virtual Library Genetics: a subject catalog covering genetics in the biosciences; includes animals, plants, microbes, human genetics and genomic research
Links Updated 21-Nov-09
Models
- Comprehensive Microbial Resource
- Entrez Structure (MMDB: Molecular Modelling Database): Three-D macromolecular structure data.
- Genomic Science Program from the U.S. Department of Energy: The next step at the Department of Energy to accelerate understanding of dynamic living systems
- JGI Microbial Genomics
- U.S. Dept. of Energy Microbial Cell Project (Archive)
- Virtual Library Genetics: a subject catalog covering genetics in the biosciences; includes animals, plants, microbes, human genetics and genomic research
Links Updated 21-Nov-09
