U.S. Department of Energy Office of Science
Genomic Science Program
Systems Biology for Energy and Environment
External Resources
No endorsement is made or implied by inclusion here. Organisms listed may not be related to Genomic Science program work.
Bacteria
Actinobacillus
- Actinobacillus actinomycetemcomitans Strain HK1651 Genome Sequencing
- Comprehensive Microbial Resource
- University of Oklahoma Advanced Center for Genome Technology
Agrobacterium
- Comprehensive Microbial Resource
- Microbial Genomes from NCBI
- Summary of A. tumefaciens, Strain C58, version 6.5: genome and metabolic pathways predicted by PathoLogic
Anabaena
Anaeromyxobacter
Aquifex
Archaeoglobus
Azotobacter
Bacillus
- Bacillus stearothermophilus Strain 10 Genome Sequencing
- BioCyc: collection of Pathway/Genome Databases
- Comprehensive Microbial Resource
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
- NRSub, a non-redundant database of Bacillus subtilis France
- SubtiList: Bacillus subtilis
- University of Oklahoma Advanced Center for Genome Technology
Bacteria (General)
- ABIM Organism Databases: links to many different databases
- Ancient bacteria at hydrothermal vent sites
- Bacteria: from NCBI Taxonomy Browser
- Common Access to Biological Resources and Information (CABRI)
- Comprehensive Microbial Resource
- Computational Molecular Biology At NIH
- Entrez Genome: NCBI: Squenced and unfinished genomes, including viruses, bacteria, archaea, and eukaryotes.
- GeneDB: multiorganism database housing fungi, protozoa, bacterial and vector genomes
- Genetics from Google
- Genome Center at Washington University: large scale generation and analysis of DNA sequence
- Genoscope Projects: Microbes Sequenced
- GOLD[TM] Genomes OnLine Database: monitors genome sequencing projects
- Micado: MICrobial Advanced Database Organisation: (formerly MadBase)
- Microbes.info: Microbiology Microbes Bacteria Information and Links
- MicrobesOnline: facilitates multi-species comparison
- NIH Genome Sequencing Proposals (2005)
- Organelle Evolution and Genomics
- Quick Guide to Sequenced Genomes: Sequenced genome projects from the Genome News Network.
- The Gene Index: Plants, animals, fungi, protist
- The SEED: an Annotation/Analysis Tool
- tmRNA Website: bacterial tmRNA
Bacteroides
- Bacteroides fragilis Sequencing Project
- Comprehensive Microbial Resource
- Microbial Genomes from NCBI
Bdellovibrio
Bifidobacterium
Bordetella
- Comprehensive Microbial Resource
- Microbial Genomes from NCBI
- Sequencing Project: Bordetella pertussis, B. parapertussis and B. bronchiseptica
Borrelia
- Borrelia burgdorferi: BNL Genome Sequencing Group
- Borrelia burgdorferi TIGR Database
- Comprehensive Microbial Resource
- Microbial Genomes from NCBI
Bradyrhizobium
Brevibacillus
Brucella
Buchnera
Burkholderia
Campylobacter
- Campylobacter jejuni Sequencing Project
- Comprehensive Microbial Resource
- Microbial Genomes from NCBI
Candidatus
Caulobacter
- Comprehensive Microbial Resource
- Microbial Genomes from NCBI
- Summary of Cb. crescentus, Strain CB15, version 6.5: genome and metabolic pathways predicted by PathoLogic
Chlamydia
- Chlamydia pneumoniae Genome Database
- Chlamydia trachomatis Genome Database
- Comprehensive Microbial Resource
- Microbial Genomes from NCBI
Chlamydophila
Chlorobium
Chromobacterium
Clostridium
- Clostridium difficile Sequencing Project
- Clostridium BC1 Sequencing at Brookhaven National Laboratory
- Comprehensive Microbial Resource
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
Corynebacterium
- Corynebacterium diphtheriae Sequencing Project
- Corynebacterium efficiens YS-314: DOGAN, a genome database of microorganisms sequenced at NITE
- Comprehensive Microbial Resource
- Microbial Genomes from NCBI
Coxiella
Cyanobacteria
Dechloromonas
Dehalococcoides
Deinococcus
- Deinococcus radiodurans Genome Database
- Comprehensive Microbial Resource
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
Desulfitobacterium
Desulfovibrio
Ehrlichia
Enterococcus
Escherichia coli
- Escherichia coli: from NCBI Taxonomy Browser
- Escherichia coli (E. coli) Genetic Stock Center
- Escherichia coli Genome Project: University of Wisconsin
- coliBASE, an online database for E. coli, Salmonella and Shigella
- Comprehensive Microbial Resource
- EcoCyc: Encyclopedia of Escherichia coli Genes and Metabolism
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
- Summary of E. coli O157:H7, Strain EDL933, serotype O157:H7, version 8.0: genome and metabolic pathways predicted by PathoLogic
- University of Wisconsin Laboratory of Genetics
- WWW Virtual Library: E. coli Index
Francisella
Frankia
Fusobacterium
Geobacter
- Comprehensive Microbial Resource
- Geobacter Project: University of Massachusetts, Amherst
- Microbial Genomes from NCBI
Haemophilus
- Haemophilus influenzae TIGR Database
- BioCyc: collection of Pathway/Genome Databases
- Comprehensive Microbial Resource
- Microbial Genomes from NCBI
Helicobacter
- Helicobacter pylori TIGR database
- Comprehensive Microbial Resource
- Microbial Genomes from NCBI
- Nature article "First set of bacterial proteins mapped"
- Summary of Hb. pylori, Strain 26695, version 6.5: genome and metabolic pathways predicted by PathoLogic
Klebsiella
Lactobacillus
- Lactobacillus bulgaricus - Complete genome sequencing: Genoscope
- Comprehensive Microbial Resource
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
Lactococcus
- Lactococcus lactis - Complete genome sequencing: Genoscope
- Comprehensive Microbial Resource
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
Legionella
Leptosphaeria
- Leptosphaeria maculans - Sequencing of a genomic region involved in host specificity: Genoscope
- Comprehensive Microbial Resource
- Genoscope Projects: Fungi Sequenced
- Microbial Genomes from NCBI
Magnetococcus (Magnetococcus)
Magnetospirillum
Marinobacter
Mesoplasma
- Broad Institute: fulfulling the promise of genetics for medicine
- Comprehensive Microbial Resource
Mesorhizobium
Methanospirillum
Methylobium
Methylococcus
Moorella
Mycobacterium
- Mycobacterium bovis Sequencing Project
- Mycobacterium leprae Sequencing Project
- Mycobacterium tuberculosis
- Mycobacterium tuberculosis Genome Database
- Comprehensive Microbial Resource
- Microbial Genomes from NCBI
- Summary of Mb. tuberculosis CDC1551, Strain CDC1551, version 6.5: genome and metabolic pathways predicted by PathoLogic
- Summary of Mb. tuberculosis H37Rv, Strain H37Rv, version 6.5: genome and metabolic pathways predicted by PathoLogic
Mycoplasma
- Mycoplasma genitalium TIGR database
- Mycoplasma pneumoniae
- Mycoplasma pulmonis - Complete genome sequencing: Genoscope
- BioCyc: collection of Pathway/Genome Databases
- Broad Institute: fulfulling the promise of genetics for medicine
- Comprehensive Microbial Resource
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
Neisseria
- Neisseria gonorrhoeae Genome Sequencing: University of Oklahoma
- Neisseria meningitidis Genome Database
- Neisseria meningitidis Sequencing Project
- Comprehensive Microbial Resource
- Microbial Genomes from NCBI
Nitrobacter
Nitrosococcus
Nitrosomonas
Nitrosospira
Nocardioides
Nostoc
Novosphingobium
Oceanobacillus
Parachlamydia
Pasteurella
Pelobacter
Pelodictyon
Photorhabdus
Pirellula
Porphyromonas
Prochlorococcus
- Comprehensive Microbial Resource
- CyanoBase genome database for cyanobacteria
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
- Nature web focus: Ocean Genomics
Pseudoalteromonas
Pseudomonas
- Pseudomonas fluorescens PfO-1 from JGI Microbial Genomics
- Pseudomonas Genome Project
- Comprehensive Microbial Resource
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
Psychrobacter
Ralstonia
- Ralstonia solanacearum - Complete genome sequencing: Genoscope
- Comprehensive Microbial Resource
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
- Ralstonia metallidurans Sequencing at Brookhaven National Laboratory
Rhizobium
Rhodobacter
- Rhodobacter sphaeroides genome project: University of Texas - Houston Health Science Center
- Rhodobacter Research: F. Robert Tabita Laboratory
- BACTER Institute: Bringing Advanced Computational Techniques to Environmental Research (BACTER)
- Comprehensive Microbial Resource
Rhodoferax
Rhodopseudomonas
- Rhodopseudomonas palustris complete genome sequence and annotation
- Comprehensive Microbial Resource
- Microbial Genomes from NCBI
Rhodospirillum
Rickettsia
- Rickettsia conorii - Complete genome sequencing: Genoscope
- Comprehensive Microbial Resource
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
Saccharophagus
Salmonella
- Salmonella typhi: University of Wisconsin Genome Project Bacterial Pathogens Genome Initiative
- Salmonella typhi Sequencing Project
- coliBASE, an online database for E. coli, Salmonella and Shigella
- Comprehensive Microbial Resource
- Latest Salmonella News
- Microbial Genomes from NCBI
Shewanella
- BACTER Institute: Bringing Advanced Computational Techniques to Environmental Research (BACTER)
- Comprehensive Microbial Resource
- Microbial Genomes from NCBI
- Shewanella Federation: Consortium formed to characterize and model the biology of Shewanella oneidensis MR-1
Shigella
- Shigella flexneri: University of Wisconsin Genome Project Bacterial Pathogens Genome Initiative
- coliBASE, an online database for E. coli, Salmonella and Shigella
- Comprehensive Microbial Resource
- Microbial Genomes from NCBI
- Summary of S. flexneri, Strain 2457T, Serotype 2a, version 8.0: genome and metabolic pathways predicted by PathoLogic
Silicibacter
Sinorhizobium
Staphylococcus
- Staphylococcus aureus MW2: DOGAN, a genome database of microorganisms sequenced at NITE
- Staphylococcus aureus N315: DOGAN, a genome database of microorganisms sequenced at NITE
- Staphylococcus aureus NCTC 8325 Genome Sequencing
- Staphylococcus aureus Sequencing Project
- Comprehensive Microbial Resource
- DOGAN (Database Of Genomes Analyzed in NITE)
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
- University of Oklahoma Advanced Center for Genome Technology
Streptococcus
- Streptococcus equi Sequencing Project
- Streptococcus mutans strain UA159 Genome Sequencing
- Streptococcus pyogenes Genome Sequencing: University of Oklahoma
- Streptococcus pyogenesi Sequencing Project
- Streptococcus thermophilus
- Comprehensive Microbial Resource
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
- University of Oklahoma Advanced Center for Genome Technology
Streptomyces
- Steptomyces ambofaciens - Partial sequencing of the linear chromosome: Genoscope
- Streptomyces coelicolor Sequencing Project
- Comprehensive Microbial Resource
- DOGAN (Database Of Genomes Analyzed in NITE)
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
Synechococcus
- Comprehensive Microbial Resource
- CyanoBase genome database for cyanobacteria
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
- SNL/ORNL Genomes to Life Project: Carbon Sequestration in Synechococcus sp. From Molecular Machines to Hierarchical Modeling
- Synechococcus sp. WH8102 Knowledgebase
Synechocystis
- Comprehensive Microbial Resource
- CyanoBase genome database for cyanobacteria
- Microbial Genomes from NCBI
- Synechocystis sp. PCC 6803
Thermoanaerobacter
Thermobifida
Thermosynechococcus
- Comprehensive Microbial Resource
- CyanoBase genome database for cyanobacteria
- Microbial Genomes from NCBI
Thermotoga
- Thermotoga maritima Genome Database
- Biologically Derived Hydrogen--Future Fuel?: article from The Scientist, Apr. 21, 2003
- Comprehensive Microbial Resource
- Microbial Genomes from NCBI
Thermus
Thiobacillus
Thiomicrospira
Treponema
- Treponema pallidum Genome Database
- BioCyc: collection of Pathway/Genome Databases
- Comprehensive Microbial Resource
- Microbial Genomes from NCBI
Tropheryma
Ureaplasma
Vibrio
- Vibrio cholerae Genome Database
- Comprehensive Microbial Resource
- Microbial Genomes from NCBI
- Summary of V. cholerae, Strain N16961, version 6.5: genome and metabolic pathways predicted by PathoLogic
Wolinella
Xanthomonas
Xylella
Yersinia
- Yersinia enterocolitica Sequencing Project
- Yersinia pestis: University of Wisconsin Genome Project Bacterial Pathogens Genome Initiative
- Yersinia pestis Sequencing Project
- Comprehensive Microbial Resource
- Microbial Genomes from NCBI
Links Updated 07-Nov-09
